Difference between revisions of "User Remote"
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__FORCETOC__ | __FORCETOC__ | ||
− | == | + | ==Submitting jobs== |
+ | The GPC and P7 job submission commands (<tt>qsub</tt> and <tt>llsubmit</tt>, respectively) do not allow for the submission of multiple job files, leaving the user to have to for-loop through multiple files when batch submission is required. The below bash function automates such looping and can be added to the shell environment | ||
− | = | + | <pre> |
+ | function submit() { | ||
+ | host=`hostname | awk '/^scinet/ {print 0} /^gpc/ {print 1} /^p7/ {print 2}'` | ||
− | + | if [ $host -eq 0 ]; then # Login node | |
+ | echo "Can't submit from a login node" | ||
+ | return | ||
+ | fi | ||
− | + | if [ $host -eq 1 ]; then # GPC | |
+ | submitter=qsub | ||
+ | elif [ $host -eq 2 ]; then # P7 | ||
+ | submitter=llsubmit | ||
+ | fi | ||
+ | |||
+ | for fpath in "$@"; do | ||
+ | $submitter "$fpath" | ||
+ | done | ||
+ | } | ||
+ | |||
+ | </pre> | ||
+ | |||
+ | ===Usage=== | ||
+ | |||
+ | <pre> | ||
+ | ashwin@gpc-f101n084-ib0 $ ls | ||
+ | job1.sh job2.sh job3.sh | ||
+ | |||
+ | ashwin@gpc-f101n084-ib0 $ submit job*.sh | ||
+ | # submits all three job files using qsub | ||
+ | </pre> | ||
+ | |||
+ | <pre> | ||
+ | ashwin@gpc-f101n084-ib0 $ ls | ||
+ | job1.ll job2.ll job3.ll | ||
+ | |||
+ | ashwin@ashwin@p7n01 $ submit job*.ll | ||
+ | # submits all three job files using qsub | ||
+ | </pre> | ||
+ | |||
+ | ==Canceling jobs== | ||
+ | |||
+ | The GPC and P7 job submission commands (<tt>canceljob</tt> and <tt>llcancel</tt>, respectively) do not allow for the submission of multiple job files, leaving the user to have to for-loop through multiple files when batch submission is required. The below bash function automates such looping and can be added to the shell environment | ||
+ | |||
+ | <pre> | ||
+ | function cancel() { | ||
+ | host=`hostname | awk '/^scinet/ {print 0} /^gpc/ {print 1} /^p7/ {print 2}'` | ||
+ | |||
+ | if [ $host -eq 0 ]; then # Login node | ||
+ | echo "Cannot cancel from Login node" | ||
+ | return | ||
+ | fi | ||
+ | |||
+ | if [ $host -eq 1 ]; then # GPC | ||
+ | canceler=canceljob | ||
+ | elif [ $host -eq 2 ]; then # P7 | ||
+ | canceler=llcancel | ||
+ | fi | ||
+ | |||
+ | for jid in "$@"; do | ||
+ | $canceler "$jid" | ||
+ | done | ||
+ | |||
+ | } | ||
+ | |||
+ | </pre> | ||
+ | |||
+ | ==Remote/Batch query running jobs== |
Revision as of 11:25, 9 February 2018
Submitting jobs
The GPC and P7 job submission commands (qsub and llsubmit, respectively) do not allow for the submission of multiple job files, leaving the user to have to for-loop through multiple files when batch submission is required. The below bash function automates such looping and can be added to the shell environment
function submit() { host=`hostname | awk '/^scinet/ {print 0} /^gpc/ {print 1} /^p7/ {print 2}'` if [ $host -eq 0 ]; then # Login node echo "Can't submit from a login node" return fi if [ $host -eq 1 ]; then # GPC submitter=qsub elif [ $host -eq 2 ]; then # P7 submitter=llsubmit fi for fpath in "$@"; do $submitter "$fpath" done }
Usage
ashwin@gpc-f101n084-ib0 $ ls job1.sh job2.sh job3.sh ashwin@gpc-f101n084-ib0 $ submit job*.sh # submits all three job files using qsub
ashwin@gpc-f101n084-ib0 $ ls job1.ll job2.ll job3.ll ashwin@ashwin@p7n01 $ submit job*.ll # submits all three job files using qsub
Canceling jobs
The GPC and P7 job submission commands (canceljob and llcancel, respectively) do not allow for the submission of multiple job files, leaving the user to have to for-loop through multiple files when batch submission is required. The below bash function automates such looping and can be added to the shell environment
function cancel() { host=`hostname | awk '/^scinet/ {print 0} /^gpc/ {print 1} /^p7/ {print 2}'` if [ $host -eq 0 ]; then # Login node echo "Cannot cancel from Login node" return fi if [ $host -eq 1 ]; then # GPC canceler=canceljob elif [ $host -eq 2 ]; then # P7 canceler=llcancel fi for jid in "$@"; do $canceler "$jid" done }