SciNet Command Line Utilities
Jump to navigation
Jump to search
Below is list of handy command-line utilities written by SciNet to help manage your data and compute.
Currently, on the GPC you need to have the 'extras' module loaded for these to work.
Note that in the table, optional arguments are denoted with square brackets (i.e. '[]').
| Command | Arguments | Description | Cluster |
|---|---|---|---|
| diskUsage | -h to see usage | Informs about the user and group file system usage. | GPC |
| quota | Short overview of a user's storage usage. | GPC | |
| qsum | most showq arguments work | Lists jobs running or in the queue, grouped by user. | GPC,TCS |
| llq1 | Gives detailed information on jobs that are actively running. | TCS | |
| jobperf | <jobId | jobName> | Informs about the performance per-node of a given job. | GPC |
| jobError | <jobId | jobName> | displays on realtime the error output of a given job. | GPC |
| jobOutput | <jobId | jobName> | displays on realtime the standard output of a given job. | GPC |
| jobcd | <jobId | jobName> | allows users to quickly move into the working directory of a given job. | GPC |
| jobscript | <jobId | jobName> | displays the submission script used when submitting a given job. | GPC |
| jobssh | <jobId | jobName> | allows users to connect to the head-node of a given job. | GPC |
| jobtop | <jobId | jobName> | allows users to "top" on the head-node of a given job. | GPC |
| jobdep | <jobId> | Displays dependencies of given job. | GPC |
| jobtree | [<userName>] | Displays the jobs tree of dependencies for a given user. | GPC |
| debugjob | [<nodes>] | Request a time-limited interactive session of up to dedicated 8 nodes | GPC |
| modulefind | [<searchWord>] | Find modules containing <searchWord> and indicate their compatibility with already loaded modules. | GPC |