SciNet Command Line Utilities

Below is list of handy command-line utilities written by SciNet to help manage your data and compute.

Currently, on the GPC you need to have the extras module loaded for these to work.

Note that in the table, optional arguments are denoted with square brackets (i.e. '[]').

Command	Arguments	Description	Cluster
diskUsage	-h to see all command options	Informs about the user and group file system usage.	GPC
quota		Short overview of a user's storage usage.	GPC
qsum	most showq arguments work	Lists jobs running or in the queue, grouped by user.	GPC,TCS
llq1		Detailed information on jobs that are actively running.	TCS
scinetUsage		Compute usage in the last 14 days, and how this affects your priority in the queue (equivalent to /scinet/gpc/scinetcli/scinet usage).	GPC
nodeperf	[<userName>]	Who is doing what on the current node?	GPC
jobperf	<jobId | jobName>	Informs about the performance of all nodes of a given job.	GPC
jobError	<jobId | jobName>	Displays realtime error output of a given job.	GPC
jobOutput	<jobId | jobName>	Displays realtime standard output of a given job.	GPC
jobcd	<jobId | jobName>	Allows users to quickly move into the working directory of a given job.	GPC
jobscript	<jobId | jobName>	Displays the submission script used when submitting a given job.	GPC
jobssh	<jobId | jobName>	Allows users to connect to the head-node of a given job.	GPC
jobtop	<jobId | jobName>	Allows users to "top" on the head-node of a given job.	GPC
jobdep	<jobId>	Displays dependencies of given job.	GPC
jobtree	[<userName>]	Displays the jobs tree of dependencies for a given user.	GPC
debugjob	[<nodes>]	Requests a time-limited interactive session of up to 8 dedicated nodes	GPC
modulefind	[<searchWord>]	Finds modules containing <searchWord> and indicate their compatibility with already loaded modules.	GPC
modulewrap	<comma-separated-modules> <command>	Loaded the modules in the list (comma separated without spaces) only to run the given command.	GPC