Difference between revisions of "SciNet Command Line Utilities"
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Currently, on the GPC you need to have the '''extras''' module loaded for these to work. | Currently, on the GPC you need to have the '''extras''' module loaded for these to work. | ||
| − | Note that in the table, optional arguments are denoted with square brackets (i.e. '[]'). | + | Note that in the table, optional arguments are denoted with square brackets (i.e. '[]'), |
| + | while mandatory arguments are denoted with angular brackets (i.e. '<>'). | ||
{| border="1" cellpadding="10" cellspacing="0" | {| border="1" cellpadding="10" cellspacing="0" | ||
| Line 37: | Line 38: | ||
|- | |- | ||
|nodeperf | |nodeperf | ||
| − | |['' | + | |[''userName''] |
|Who is doing what on the current node? | |Who is doing what on the current node? | ||
|GPC | |GPC | ||
| Line 82: | Line 83: | ||
|- | |- | ||
|jobtree | |jobtree | ||
| − | |['' | + | |[''userName''] |
|Displays the jobs tree of dependencies for a given user. | |Displays the jobs tree of dependencies for a given user. | ||
|GPC | |GPC | ||
|- | |- | ||
|debugjob | |debugjob | ||
| − | |[ | + | |[''nodes''] |
|Requests a time-limited interactive session of up to 8 dedicated nodes | |Requests a time-limited interactive session of up to 8 dedicated nodes | ||
|GPC | |GPC | ||
|- | |- | ||
|modulefind | |modulefind | ||
| − | |['' | + | |[''searchWord''] |
|Finds modules containing ''<searchWord>'' and indicate their compatibility with already loaded modules. | |Finds modules containing ''<searchWord>'' and indicate their compatibility with already loaded modules. | ||
|GPC | |GPC | ||
Revision as of 13:33, 18 March 2015
Below is list of handy command-line utilities written by SciNet to help manage your data and compute.
Currently, on the GPC you need to have the extras module loaded for these to work.
Note that in the table, optional arguments are denoted with square brackets (i.e. '[]'), while mandatory arguments are denoted with angular brackets (i.e. '<>').
| Command | Arguments | Description | Cluster |
|---|---|---|---|
| diskUsage | -h to see all command options | Informs about the user and group file system usage. | GPC |
| quota | Short overview of a user's storage usage. | GPC | |
| qsum | most showq arguments work | Lists jobs running or in the queue, grouped by user. | GPC,TCS |
| llq1 | Detailed information on jobs that are actively running. | TCS | |
| scinetUsage | Compute usage in the last 14 days, and how this affects your priority in the queue (equivalent to /scinet/gpc/scinetcli/scinet usage). |
GPC | |
| nodeperf | [userName] | Who is doing what on the current node? | GPC |
| jobperf | <jobId | jobName> | Informs about the performance of all nodes of a given job. | GPC |
| jobError | <jobId | jobName> | Displays realtime error output of a given job. | GPC |
| jobOutput | <jobId | jobName> | Displays realtime standard output of a given job. | GPC |
| jobcd | <jobId | jobName> | Allows users to quickly move into the working directory of a given job. | GPC |
| jobscript | <jobId | jobName> | Displays the submission script used when submitting a given job. | GPC |
| jobssh | <jobId | jobName> | Allows users to connect to the head-node of a given job. | GPC |
| jobtop | <jobId | jobName> | Allows users to "top" on the head-node of a given job. | GPC |
| jobdep | <jobId> | Displays dependencies of given job. | GPC |
| jobtree | [userName] | Displays the jobs tree of dependencies for a given user. | GPC |
| debugjob | [nodes] | Requests a time-limited interactive session of up to 8 dedicated nodes | GPC |
| modulefind | [searchWord] | Finds modules containing <searchWord> and indicate their compatibility with already loaded modules. | GPC |
| modulewrap | <comma-separated-modules> <command> | Loaded the modules in the list (comma separated without spaces) only to run the given command. | GPC |